Code

Here are links to some python packages I have either contributed to or written:

Code pertaining to my publications

• PyTubular: Python module for the evaluation of probability densities and exit rates in a tubular ensemble
• cloning_algorithm: Cloning algorithm for measuring rare events from stochastic time series
• PySTFP: Python module for (symbolic) evaluation of the short-time Fokker-Planck propagator to arbitrary accuracy
• Fokker-Planck: Parameter inference, calculation of spectrum, and numerical simulation of the Fokker-Planck equation in Python
• Fractional-wave-equation: Numerical solution of nonlinear fractional wave equations in Python
• PyRoss: Inference, forecasts, and optimised control for epidemiological models in Python

Other projects

• lunar-lander: Implementation of deep reinforcement learning algorithms for training an agent to play the game lunar lander
• traveling_salesman: Solver for the traveling salesman problem for real-world locations; uses the openrouteservice.org API and a genetic algorithm
• PyHarmonize: Python module for adding harmony lines to recorded melodies